Saturday, 24 February 2018

Pokok Kanser (anti-cancer plant)

I visited a friend's house at Sri Gemilang in Kota Bharu, Kelantan.

She had this plant which had thick waxy leaves, dark green fruits in clusters, and bright yellow flowers which smelled of a cross between nangka (jackfruit), magnolia (bunga magnolia or bunga telur) and bunga kenanga.

She said the leaves have anticancer properties. She didn't know its name. She called it Pokok Kanser (anti-cancer plant).

Thick waxy leaves and fragrant, bright yellow flower or hirva chafa

Thick waxy leaves and green fruits in cluster. The fruits will ripen and turn yellow, just like bananas do.

Scientific Name: Artabotrys hexapetalus 
Family: Annonaceae
Common Name: Green champa, Hirava chafa
In Indian, it is called the Hirva chafa flower.
Description: A large woody rambler. Flowers are greenish yellow
Synonym: A. odoratissimus

Varieties:
Artabotrys odorattisimus (Hirwa chafa or Hirva chafa)
Artabotrys uncinatus
Artabotrys hexapetalus
Cananga odorata or Ylang Ylang (sweet myrrh)

Uses
  1. Anti-cancer
  2. Depression
  3. High blood pressure
  4. Aromatherapy


External links
http://www.floraofbangladesh.com/2016/11/kathali-chapa-artabotrys-hexapetalus.html
Green champa | Gardentia (gardentia.net)
http://www.chhajedgarden.com/artabotrys-uncinatus-pack-of-2.html
https://shop.lebermuth.com/products/oil-ylang-ylang-myrrh-bbw
http://www.lgbotanicals.com/Ylang-Ylang-Complete-Organic-Essential-Oil_p_292.html
http://www.ehorticulture.com/tree-plants-seeds/ornamental-plants/artabotrys-hexapetalus-detail.html
http://www.flickriver.com/photos/tags/artabotrysodoratissimus/interesting/

Friday, 23 February 2018

Amylase test and Acute pancreatitis

Description
Amylases are enzymes that catalyze the hydrolysis of amylopectin, amylose, glycogen, and their hydrolyzed products into simple and easily digestible sugars. Amylase is an enzyme produced in the pancreas and by the salivary glands that converts starches, glycogens, and related polysaccharides into simple and easily digested sugar. It is also present in molds, bacteria, yeasts, and plants.

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Amylase isoenzymes
Alpha amylase is of salivary origin (S-type amylase) or pancreatic origin (P-type amylase).

  1. Salivary origin (S-type amylase)
  2. Pancreatic origin (P-type amylase)

Salivary amylase is synthesized by parotid, sweat, and lactating mammary glands.

Pancreatic amylase is secreted by acinar cells of the pancreas and is tissue specific and more temperature labile than salivary amylase.

Separation of amylase enzyme (a protein) by slab gel electrophoresis
On agarose gel, the mobility of the less anionic isoenzyme corresponds to pancreatic amylase, while the more anionic band is salivary amylase.

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Macroamylasemia
Macroamylasemia is a condition of persistently elevated serum amylase activity with no apparent pancreatic disorder due to the formation of a large amylase-globulin complex, which is not excreted.

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Test overview
An amylase test measures the amount of this enzyme in a sample of blood taken from a vein or in a sample of urine.

  1. Blood/serum amylase
  2. Urine amylase

Amylase levels
Normally, only low levels of amylase are found in the blood or urine. However, if the pancreas or salivary glands become damaged or blocked, more amylase is usually released into the blood and urine. In the blood, amylase levels rise for only a short time. In the urine, amylase may remain high for several days.

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Symptoms
Almost everyone with acute pancreatitis has severe abdominal pain in the upper abdomen. The pain penetrates to the back in about 50% of people.

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Causes & pain

  1. When acute pancreatitis is caused by gallstones, the pain usually starts suddenly and reaches its maximum intensity in minutes. 
  2. When pancreatitis is caused by alcohol, pain typically develops over a few days. 
Whatever the cause, the pain then remains steady and severe, has a penetrating quality, and may persist for days.

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Pain & relief
Coughing, vigorous movement, and deep breathing may worsen the pain. Sitting upright and leaning forward may provide some relief. Most people feel nauseated and have to vomit, sometimes to the point of dry heaves (retching without producing any vomit). Often, even large doses of an injected opioid analgesic do not relieve pain completely.

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Breathing problems
Some people, especially those who develop acute pancreatitis because of heavy alcohol use, may never develop any symptoms other than moderate to severe pain. Other people feel terrible. They look sick and are sweaty and have a fast pulse (100 to 140 beats a minute) and shallow, rapid breathing. Rapid breathing may also occur if people have inflammation of the lungs, areas of collapsed lung tissue (atelectasis), or accumulation of fluid in the chest cavity (pleural effusion). These conditions may decrease the amount of lung tissue available to transfer oxygen from the air to the blood and can lower the oxygen levels in the blood.

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Body temperature
At first, body temperature may be normal, but it may increase in a few hours to between 100° F and 101° F (37.7° C and 38.3° C).

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Blood pressure
Blood pressure is usually low and tends to fall when the person stands, causing lightheadedness or transient loss of consciousness (TLOC) or syncope.

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Yellow sclerae
Occasionally, the whites of the eyes (sclera) become yellowish.

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Complications of acute pancreatitis

The main complications of acute pancreatitis are

  1. Low blood pressure and shock
  2. Damage to other organs
  3. Infection of the pancreas
  4. Pancreatic pseudocyst

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Pancreatic damage
Damage to the pancreas may permit activated enzymes and toxins such as cytokines to enter the bloodstream and cause low blood pressure and damage to other organs, such as the lungs and kidneys. Some people who have acute pancreatitis develop failure of other organs including the kidneys, lungs, or heart, and this failure can lead to death.

The part of the pancreas that produces hormones, especially insulin, tends not to be affected by acute pancreatitis.

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Swollen upper abdomen
In acute pancreatitis, a person may develop some swelling in the upper abdomen. This swelling may occur because the intestinal contents have stopped moving, causing the intestines to swell (a condition called ileus).

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Acute pancreatitis
In severe acute pancreatitis, parts of the pancreas may die (called necrotizing pancreatitis), and body fluid may escape into the abdominal cavity, which decreases blood volume and results in a large drop in blood pressure, possibly causing shock and organ failure. Severe acute pancreatitis can be life threatening.

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Inflammed pancreas (due to infection)
Infection of an inflamed pancreas is a risk, particularly after the first week of illness. Sometimes, a doctor suspects an infection when a person's condition worsens and a fever develops, especially if this happens after the person's first symptoms started to subside.

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Pancreatic pseudocyst
A pancreatic pseudocyst is a collection of pancreatic enzymes, fluid, and tissue debris that sometimes forms in and around the pancreas. The pseudocyst goes away spontaneously in some people. In other people, the pseudocyst does not go away and can become infected.

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Diagnosis
Blood tests
Imaging tests

Characteristic abdominal pain leads a doctor to suspect acute pancreatitis, especially in a person who has gallbladder disease or who drinks a lot of alcohol. During the examination, a doctor often notes that the abdomen is tender and the abdominal wall muscles may be rigid. When listening to the abdomen with a stethoscope, a doctor may hear few or no bowel (intestinal) sounds.

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Blood tests
No single blood test proves the diagnosis of acute pancreatitis, but certain tests suggest it. Blood levels of two enzymes produced by the pancreas—amylase and lipase—usually increase on the first day of the illness but return to normal in 3 to 7 days. If the person has had other flare-ups (bouts or attacks) of pancreatitis, however, the levels of these enzymes may not increase significantly, because so much of the pancreas may have been destroyed that few cells are left to release the enzymes.

The white blood cell count and blood urea nitrogen level (marker of kidney function) are usually increased.

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Imaging tests
X-rays of the abdomen may show dilated loops of intestine or, rarely, one or more gallstones. Chest x-rays may reveal areas of collapsed lung tissue or an accumulation of fluid in the chest cavity.

An ultrasound of the abdomen may show gallstones in the gallbladder or sometimes in the common bile duct and also may detect swelling of the pancreas.

A computed tomography (CT) scan is particularly useful in detecting inflammation of the pancreas and is used in people with severe acute pancreatitis. Because the images are so clear, a CT scan helps a doctor make a precise diagnosis and identify complications of pancreatitis.

Magnetic resonance cholangiopancreatography (MRCP), a special magnetic resonance imaging (MRI) test, may also be done to show the pancreatic- duct and bile duct and to determine if there is any dilation, blockage, or narrowing of the ducts.

Endoscopic retrograde cholangiopancreatography allows doctors to view the bile duct and pancreatic duct. During this test, doctors are able to remove from the bile duct gallstones that are causing a blockage.

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Other tests
If doctors suspect that there is an infection, they may withdraw a sample of infected material from the pancreas by inserting a needle through the skin into the fluid collection.

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Prognosis
In acute pancreatitis, a CT scan helps determine the outlook or prognosis. If the scan indicates that the pancreas is only mildly swollen, the prognosis is excellent. If the scan shows large areas of destroyed pancreas, the prognosis is usually poor.

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Scoring (arbitrary)
A number of scoring systems help doctors predict the severity of acute pancreatitis, which can help them better manage the person. These scoring systems may include information such as age, medical history, physical examination findings, laboratory tests, and CT scan results.

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Death
When acute pancreatitis is mild, the death rate is about 5% or less. However, in pancreatitis with severe damage, or when the inflammation is not confined to the pancreas, the death rate can be much higher. Death during the first several days of acute pancreatitis is usually caused by failure of the heart, lungs, or kidneys. Death after the first week is usually caused by pancreatic infection or by a pseudocyst that bleeds or ruptures.

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Treatment

  1. Fasting
  2. Fluids by vein
  3. Pain relief
  4. Measures to support nutrition
  5. Sometimes endoscopy or surgery

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Treatment
Treatment of mild acute pancreatitis usually involves short-term hospitalization where fluids are given by vein (intravenously / i.v.), analgesics are given for pain relief, and the person fasts to try to rest the pancreas. A low-fat, soft diet is usually started soon after admission if there is no nausea, vomiting, or severe pain.

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Intravenous fluids
People with moderate to severe acute pancreatitis need to be hospitalized for a longer period of time and are given intravenous fluids. They must initially avoid food and liquids, because eating and drinking stimulate the pancreas. Symptoms such as pain and nausea are controlled with drugs given intravenously. Doctors may give antibiotics if these people show any signs of infection.

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People with severe acute pancreatitis are admitted to an intensive care unit (ICU), where vital signs (pulse, blood pressure, and rate of breathing) and urine production can be monitored continuously.

Blood samples are repeatedly drawn to monitor various components of the blood, including the following:

  1. Hematocrit (Hct), 
  2. Blood sugar (glucose) levels, 
  3. Electrolyte levels, 
  4. White blood cell (WBC) count, and 
  5. Blood urea nitrogen (BUN) levels or Urea levels.*
*Urea analysis is performed nowadays, where urea nitrogen is measured and multiplied by 2 and reported as urea levels.

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Nasogastric tube
A tube may be inserted through the nose and into the stomach (nasogastric tube) to remove fluid and air, particularly if nausea and vomiting persist and ileus is present.

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Parenteral nutrition
People with moderate to severe acute pancreatitis are often given nutrition via a thin plastic tube that is inserted through the nose and down through the stomach into the small intestine (tube feeding). Less often, people are given intravenous feeding.

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Other
For people with a drop in blood pressure or who are in shock, blood volume is carefully maintained with intravenous fluids and drugs and heart function is closely monitored. Some people need supplemental oxygen, and the most seriously ill require a ventilator (a machine that helps air get in and out of the lungs).

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Pancreatitis due to gallstones
When acute pancreatitis results from gallstones, treatment depends on the severity. Although more than 80% of people with gallstone pancreatitis pass the stone spontaneously, ERCP with stone removal is usually needed for people who do not improve because they have a stone they cannot pass. At some point, the gallbladder is usually removed but if the pancreatitis is severe, removal of the gallbladder can usually be delayed until symptoms subside.

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Pseudocysts & drainage
Pseudocysts that have rapidly grown larger or are causing pain or other symptoms are usually drained. Depending on its location and other factors, a pseudocyst can be drained by doing a surgical procedure, or by placing a drainage tube (catheter) into the pseudocyst. The catheter can be placed using an endoscope or by inserting the catheter directly through the skin into the pseudocyst. The catheter allows the pseudocyst to drain for several weeks.

An infection is treated with antibiotics, and may require removal of infected and dead tissue endoscopically or surgically.

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Indications/Applications
Most elevations in serum amylase are due to increased rates of amylase entry into the blood stream, decreased rates of clearance or both. The test is primarily used, in conjunction with a lipase test, to help diagnose and monitor acute pancreatitis and other pancreatic disorders. Serum amylase increases in 6-48 hrs of onset of acute pancreatitis but not in proportion to the severity of the disease and activity returns to normal in 3-5 days. Urine amylase increases in proportion to serum amylase and remains elevated for several days after serum amylase has been normalized. The ratio of amylase urinary clearance to creatinine clearance can be used in the diagnosis of acute and relapsing pancreatitis.

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Other uses of serum amylase test
Serum amylase levels can also be elevated in pancreatic cancers, although a bit too late to be diagnostically useful; however, the results can assist in monitoring treatment of pancreatic cancers. Other conditions in which determination of serum amylase is useful is to determine the effects of the removal of gallstones, and swelling and inflammation of the salivary/parotid glands.

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Indications for testing are as follows:

  • Severe abdominal pain
  • Fever
  • Loss of appetite (LOA)
  • Nausea

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Causes
The most common causes (more than 70% of cases) of acute pancreatitis are

  1. Gallstones
  2. Heavy alcohol intake
  3. Other causes

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Gallstones
Gallstones cause about 40% of cases of acute pancreatitis. Gallstones are collections of solid material in the gallbladder. These stones sometimes pass into and block the duct that the gallbladder shares with the pancreas (called the common bile duct).

Normally, the pancreas secretes pancreatic fluid through the pancreatic duct into the first part of the small intestine (duodenum). This pancreatic fluid contains digestive enzymes that help digest food. If a gallstone becomes stuck in the sphincter of Oddi (the opening where the pancreatic duct empties into the duodenum), pancreatic fluid stops flowing. Usually, the blockage is temporary and causes limited damage, which is soon repaired. But if the blockage remains, the enzymes collect in the pancreas and begin to digest the cells of the pancreas, causing severe inflammation.

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Alcohol
Alcohol use causes about 30% of cases of acute pancreatitis and usually occurs only after heavy alcohol use. The risk of developing pancreatitis increases with increasing amounts of alcohol (4 to 7 drinks per day in men and 3 or more drinks per day in women). How alcohol causes pancreatitis is not fully understood. One theory is that alcohol is converted into toxic chemicals in the pancreas that cause damage. Another theory is that alcohol may cause the small ductules in the pancreas that drain into the pancreatic duct to clog, eventually causing acute pancreatitis.

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Other causes
For some people, acute pancreatitis is hereditary. Gene mutations that predispose people to developing acute pancreatitis have been identified. People who have cystic fibrosis or carry the cystic fibrosis genes have an increased risk of developing acute as well as chronic pancreatitis.

Many drugs can irritate the pancreas. Usually, the inflammation resolves when the drugs are stopped.

Viruses can cause pancreatitis, which is usually short-lived.

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SOME CAUSES OF ACUTE PANCREATITIS

  1. Gallstones
  2. Heavy alcohol use
  3. Drugs such as angiotensin-converting enzyme (ACE) inhibitors, azathioprine, furosemide, 6-mercaptopurine, pentamidine, sulfa drugs, and valproate
  4. Estrogen use in women with high levels of lipids in the blood
  5. High levels of calcium in the blood (which may be caused by hyperparathyroidism)
  6. Viruses such as mumps, coxsackie B virus, and cytomegalovirus
  7. High levels of triglycerides in the blood (hypertriglyceridemia)
  8. Damage to the pancreas caused by surgery or endoscopy (such as endoscopic retrograde cholangiopancreatography [ERCP])
  9. Damage to the pancreas caused by blunt or penetrating injuries
  10. Cancer of the pancreas, or other blockages of the pancreatic duct
  11. Hereditary pancreatitis, including a small percentage of people with cystic fibrosis or cystic fibrosis genes
  12. Cigarette smoking
  13. Kidney transplantation
  14. Pregnancy (rare)
  15. Tropical pancreatitis

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Biochemical markers for acute pancreatitis

Serum amylase & serum lipase tests
Serum amylase and lipase are common tests obtained as biochemical markers for acute pancreatitis.

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Blood collection and test panels

The 2 tests for amylase are serum and urine.
For both tests, patient should not drink alcohol for 24 hours before the test.

For the blood test, patients should not eat or drink anything except water for 2 hours before the test.

For the urine test, patients should drink enough fluids during the 24-hour test to avoid dehydration. In this test, patients should check with their physician about any medications being taken. Timed urine specimens can be obtained for urinary amylase and normalized to creatinine content.

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How to Prepare for Amylase Test

To prepare for an amylase test:

  1. Do not drink alcohol for 24 hours before the test.
  2. For a blood test for amylase, do not eat or drink anything except water for at least 2 hours before having the test.
  3. For a 24-hour urine test for amylase, be sure to drink enough fluids during the test to prevent dehydration.

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Methods
Blood is collected into a vacuum tube via venipuncture (ie blood is obtained from a vein in the arm).

For urine, a patient urinates into a small container and then transfers the sample to a lab-provided larger container with a small amount of preservative.

Plasma samples that have been anticoagulated with citrate or oxalate should be avoided because amylase is a calcium-containing enzyme and false low levels can be obtained with such specimens.

Notes regarding these methods are as follows:

Keep container refrigerated.
Do not touch inside of container or drop any foreign matter into it.

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Test panels

Related tests are as follows:

  1. Lipase test
  2. Urinalysis
  3. Urine creatinine/clearance
  4. Isoamylase fractionation

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LABORATORY TEST & FINDINGS

Set up for manual serum amylase test
Reference range
Each lab has its own reference ranges for the tests that it offers.

The reference range for amylase is as follows:

Serum test: Normal is 40-140 U/L
Urine Test: Normal is 24-400 U/L

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Interpretation of serum amylase levels

Conditions associated with high amylase levels are as follows:

  1. Peptic ulcers
  2. Intestinal obstruction
  3. Pancreatic duct obstruction
  4. Cancer
  5. Gallbladder attacks
  6. Mesenteric thrombosis
  7. Postoperative abdominal surgery
  8. Mumps
  9. Macroamylasemia
  10. Tubal pregnancy

Conditions associated with low amylase levels are as follows:

  1. Liver damage
  2. Cystic fibrosis
  3. Pancreatic cancer
  4. Toxemia of pregnancy

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Pancreatic enzymes and products

Early in the course of acute pancreatitis, there is a breakdown in the synthesis-secretion coupling of pancreatic digestive enzymes; synthesis continues while there is a blockade of secretion. As a result, digestive enzymes leak out of acinar cells through the basolateral membrane to the interstitial space and then enter the systemic circulation.

Serum amylase
Serum amylase rises within 6 to 12 hours of the onset of acute pancreatitis. Amylase has a short half-life of approximately 10 hours and in uncomplicated attacks returns to normal within three to five days. Serum amylase elevation of greater than three times the upper limit of normal has a sensitivity for the diagnosis of acute pancreatitis of 67% to 83% and a specificity of 85% to 98%.

However, elevations in serum amylase to more than three times the upper limit of normal may not be seen in approximately 20% of patients with alcoholic pancreatitis due to the inability of the parenchyma to produce amylase, and in 50% of patients with hypertriglyceridaemia-associated pancreatitis as triglycerides interfere with the amylase assay. Given the short half-life of amylase, the diagnosis of acute pancreatitis may be missed in patients who present >24 hours after the onset of pancreatitis. In addition, elevations in serum amylase are not specific for acute pancreatitis and may be seen in other conditions.

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Sensitivity & specificity of amylase & lipase tests for pancreatitis
The sensitivity and specificity of amylase and lipase for pancreatitis depend upon the threshold for an abnormal result. Higher thresholds are associated with better specificity but lower sensitivity. Several studies suggest that lipase may be more specific than amylase in the diagnosis of acute pancreatitis. A lipase level of three times the upper limit of normal is approximately 98% specific for acute pancreatitis.

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Acknowledgement
Text and content are adapted from Up-To-Date and many test methods by various vendors, and made easy for small group discussion (SGD) for Phase I teaching-learning sessions.

Saturday, 6 January 2018

Itch and pain in the female GUS & ReproS

The female genitourinary system (GUS) and reproductive system (ReproS) are close together and  delicate. They are a woman's best friend. The female genitalia must be properly washed daily, each time after defecation or urination. Soaps and body wash gels and liquids used for personal hygiene matters for the female, not so much for males.

I'm bringing up this matter because this is a common problem in females, and many females end up coming to hospital or clinic for pain in the genitalia and/ ReproS. 

Young women and old women also get infections of the female genitalia. Mothers often have hematuria (blood in urine, bloody urine) and pain urinating following maternal delivery. Non pregnant women and menopausal women also get infections, but less frequent than mothers in their reproductive age.

Infections of the female genitalia can mean a lot of things. It can be just urinary tract infection (UTI). It can be just extreme itch due to Chlamydia trachomatis infection. It can be both UTI and Chlamydia. It can be other things. A good physical examination to locate the itch, pain and examination of the female genitalia becomes necessary. Itch with yellowish discharge indicate pus, coming from an infection. 

Sometimes doctors do not convey the condition clearly to their female patients, leaving the patients lost as to what conditions they actually have. This is bad enough as women tend to worry a lot when something goes wrong in the most private part.

Here is a scenario to let you see the scope a how a female patient got very worried. Text is edited.

SCENARIO

A 67-year old unmarried female Malay lady lives alone after retirement at 55. She had pain on urination and was admitted to hospital. She was diagnosed to have UTI and prescribed a course of antibiotics. Her condition did not heal after a week and she was again prescribed another course of antibiotics for a week. She was discharged home. 

At home, she was still sensing pain upon urination once in a while. She contacted some friends for help. Her friends tried to help and asked her questions too.
  1. She wanted to know if she needed a third course of antibiotics to rid her pain. Her friends replied no, and to seek traditional alternatives.
  2. She wanted to know if her blood test results was a sign of stone in the bladder. Her friends asked if the doctors had performed an ultrasound scan of the kidneys and bladder when they did her urine test. She replied no.
  3. Her friends told her that renal stones hardly form in the urinary bladder unless she was a "teh tarik" person. They told her that if she was a teh tarik person, then she would have had renal stones by age mid-20s. She replied she did not like tea latte since young. Her friends said they did not think she had renal stones since she was not a teh tarik fan. She had to be a better consumer of teh tarik than the teh tarik man in order to get renal stones.
  4. She asked if it was just infection? Her friends believed so it was an occasional infection.
  5. She said her doctor first said it was UTI and she was given Zinnat.
  6. She said she took 2 courses of antibiotics but her condition did not resolve as she had expected. So she was worried. Her friends tried to calm her down and said her condition would resolve, and was just taking a bit longer.
  7. She wanted to know if the lab test results meant a dangerous condition. She was really worried and wanted some clear answers.
  8. Her friends told her that even if she kept her personal hygiene super clean, she can still catch an infection. She wanted to know how and why? Why in the world would over-washing and being super clean give infection?
  9. She wanted to know if her infection was the side effect of antibiotics, .... possibly a Candida?
  10. Her friends told her if she had Candida, she would not and could not remain still as the itch is do severe and dreadful. She said she did not feel any itch, just the pain when urinating.
  11. Her friends told her Candida was unlikely in elderly ladies her age. It was just one of those infections.
  12. She wanted to know if she had to take MORE ANTIBIOTICS!
  13. Her friends tried to calm her down and told her to treat her condition conservatively, ie, to drink warm water regularly, every hour and before bed.
  14. She wanted to know if increasing water intake will resolve her condition. Will her infection clear up?
  15. Her friends added, yes, conservative treatment is alright, ie, drink water, get some rest, eat boiled food, no spicy food, until her condition improves and clears up.
  16. Her friends asked if her pain was increasing or otherwise. 
  17. She wanted to know if she was ok, and not worry about her condition.
  18. Her friends told her worrying would only add to her existing problem (ie make it worse).
  19. She said sometimes there was no pain and at times, there was excruciating pain upon urinating.
  20. Her friends told her not to worry too much. She said she was a worrier!
  21. According to the lab test results, there was blood in her urine. Her friends explained why.
  22. Her friends asked if her urine was cloudy (murky), clear or sandy? She replied it was clear.
  23. Her friends responded she had no stones.
  24. She furnished her lab test results:  pH 5.5, protein, glucose, ketone nil.
  25. Her friends explained she did not drink sufficient water and that she was probably dehydrated, her urine was probably concentrated, with a highly acidic pH (lower limit of normal range). If she had eaten meat (chicken or beef), that too would make her urine highly acidic. Urine pH 5.5 is ok but pH 6.0 is better.
  26. She furnished additional lab test results: Epithelial occasional, crystals and casts ... nil. Her friends explained why.
  27. She asked if the amount of blood in the test results was not a lot. Her friends replied no.
  28. She furnished additional lab test results: WBC up to 100 ... a lot! She was intimidated by the "big numbers".
  29. She furnished yet additional lab test results: Leukocyte 3+. Her friends explain why, ie WBCs are raised in infections. They wanted to know if her doctors have found out what bacteria had invaded her.
  30. She thanked her friends for alleviating much of her fears about her condition as it was uncomfortable. She wanted to know if she needed to next see a urologist or a gynae.
  31. She said when she was admitted, her urine culture did not show which bacteria was significant.
  32. She said her first urine test had no RBCs and had no blood in urine.
  33. Her friends informed her of likely bacteria as causative agents of her painful episodes upon urination.
  34. It has been a week after her discharge from hospital. She lived alone and that caused her a lot of worry.
In the end, her friends managed to counsel her and she was happy that her condition could be easily taken care of. She seemed much happier after getting all the answers she needed. Her doctors should have taken additional time to explain to her, her lab test results and the progress of her condition. It saves the patient a lot of useless worrying when they can be advised on the next course of action to take at home and therefore be in a position for self-help. They in turn can help other friends who face the same condition.

Friday, 29 December 2017

Chest pain due to emotional distress

Heart problems can arise from many sources and in many forms. With today's hectic life and where the market forces and financial means govern a major part of life, we now see a trend, where young and middle-aged men are falling prey to heart disease.

I have stressed on finance and heart disease. Market crash, burden as guarantors, money swindles, white collar crimes, etc have put many unsuspecting men, as victims of heart disease.

Young people, especially men, need and want to portray a healthy and wealthy clean life in front of an already stressful life. This pressure to perform and conform to societal needs, have made many men predators and other men, victims of con men.

The problem is real and men are falling prey to heart disease. Some have died and many will die. Heart disease will kill more and more younger men who deal with money.

What is the problem? What is the root cause? It is complicated.

Can we stop heart disease? No, but we can try a few things to slow it and prevent it from ever happening.


Scenario

A 45-year old Malay male banker had difficulty breathing and was brought to A&E at a government hospital near his workplace. He was admitted to CCU where he recovered within 3 days.

He was moved to the open ward where family members could easily visit him during visiting hours. When he was conscious, he explained his "bad luck" to his siblings.

He was prescribed drugs to expand his blood vessels. He felt dizzy when he took the drugs.


Q&A

1. What was the cause of his heart disease?

He had signed as a guarantor for a "friend" who lived approximately 350 km south. The "friend" disappeared with a large sum of Ringgit. His constant worries got the best of him and he landed in hospital with a heart attack.

2. Can his condition worsen?

Yes, it usually worsens. He has had a prior angiogram performed 12 years prior. He is thus at high risk for heart disease.

3. What advice can you give such a patient?

  1. Don't sign on as a guarantor for anyone.
  2. Don't trust anyone with your $$$.
  3. The best person you trust, will in the end, be the greatest cheat and cheat you!!
  4. Always advise a person who seeks a guarantor, that in this life, "there is no such thing as a human guarantor". 
  5. Life is never guaranteed. Life is on borrowed time. It ends when it ends. The exact end is unknown.
  6. Trust just yourself. Trust only yourself.
  7. Trust your spouse if she can be trusted. Otherwise don't.
  8. Don't deal with money more than what you are willing to lose.
  9. Never trust a friend. Treat friends as suspicious and bad hats unless proven otherwise.
  10. Give him your piece of mind and give him 1001 reasons for not being a guarantor. A human cannot guarantee another person's life, wealth or health. You can only guarantee a burial place.
  11. Play safe, live safe, and hope heart attacks will not come near.
  12. Guarantors have to live a sad life with likely heart attacks.
  13. Guarantors are at high risk of heart attacks.
  14. Don't become guarantors unlike you wish a heart attack to befall you!


4. What do you think this patient will do after he is discharged from hospital?

Well, he can go looking for the "friend" who cheated him, or he can hire a private investigator to locate the "friend" and charge him in court. That way money matters can be settled quickly and the "friend: can be tried for cheating etc. Then the heart attacks should resolve and not return. Easier said than done.

5. Are men really brave enough to turn a friend away when he is seeking financial help, as in this case, a guarantor?

Grown-up married men should never ever have to become guarantors for anyone and for anything. Forget trying to help a friend. Forget trying to look good. Forget trying to display generosity. It does not pay to be a kind friend of a con man.

6. What sort of psychological war goes on inside men, that men believe they can become successful guarantors and minus the worries of being one?

It is just silly. Being silly adds to endless worries, and worries add up to give a heart attack ... all in good time.

7. Are men honest about their health and wealth status?

Some men are honest. Many are not. Banks have guarantors to save their loans, to ensure they get back what they loaned out, plus interest, of course. Repayment of banks loans is the most difficult for banks to do without brute force or court settlement, and for borrowers and guarantors to guarantee.

8. Is the present banking system safe for human health?

No. Bright men should be able to see through such a corrupt banking system we have in place everywhere in the world.

9. Why can't someone study a non-corrupt banking system, that does not prey on unsuspecting men who want to be guarantors, who are oblivious about future problems of their actions?

The banking industry is the most corrupt of all industries. Men should try and avoid corrupt banking systems by not becoming guarantors. Down with the idea of guarantors. Find something better.

10. Are there better banking systems which are not taxing on men's health?

There should be. There must be one. It is up to the banking industry to find safer means of obtaining loan repayments, and one which has the least impact on men's health.

Tuesday, 19 December 2017

Cardiogenic shock secondary to anterolateral myocardial infarction

Topics to search:
Hemodialysis
Anterolateral MI
Cardiogenic shock
ECG
STEMI
Diagnosis
Causes
Emergency Medicine (eMedicine)
ICD-10


I have chosen this topic for this post because it is a real problem and a real cause of death. It happens even with the best care afforded. It happens and it runs in families. There are risk factors. There are clear signs to look out for. It is an end-point of a chronic disease process. It doesn't just appear out of the blue. So how do we go about picking out bits and pieces and learn about this condition?

I will write an abridged scenario. See if you can clearly see how the disease progressed from A to Z. This is a real case scenario that occurred on 16 December 2017.


SCENARIO

A 60-year old Malay diabetic female with healed diabetic foot, cataract and partial sight felt fatigued following dialysis. She was brought to a Government hospital on 12 Dec 2017 at 8 pm, where she was warded on 13 Dec 2017 at 2 am. She was conscious. She was hospitalised for pulmonary emphysema with coughing and hypotension. She was treated and felt better the following day, 14 Dec 2017. However, her BP dropped to critical level and she was rushed to ICU, where BP was stabilised. She was still conscious. It was 15 Dec 2017.  Later in ICU, her BP dropped again and she suffered an extensive acute myocardial infarction (massive heart attack) at 10 am. She was rushed to CCU, where she became unconscious. Her condition worsened by 2 pm, and she suffered a cardiogenic shock. She passed away at 3:40 pm on 16 Dec 2017.


Here are some tough questions regarding the passage above.
  1. What is myocardial infarct/infarction (MI)?
  2. Why does MI occur?
  3. What are the causes of MI?
  4. Who are at risk of MI?
  5. What are diabetic complications?
  6. Will all diabetics die from MI?
  7. Will all diabetics suffer from cardiogenic shock?
  8. Can the patient be saved after MI?
  9. Can the patient still be saved after cardiogenic shock?
  10. Why does cardiogenic shock occur secondary to MI?
  11. Are there devices which can be used following MI?
  12. Which type of MI is fatal?
  13. What is STEMI?
  14. Which part on the heart does anterolateral aspect refer to?
  15. What is the cause of anterolateral MI?
  16. Which part of the coronary artery is occluded in anterolateral MI?
  17. Why is ECG essential in Emergency Medicine?
  18. How will ECG indicate anterolateral MI?
  19. What is cardiac aneurysm?
  20. When are visitors allowed to visit the unconscious patient in CCU?
  21. Who is allowed to visit patients in CCU?
  22. Is ICU or CCU a terminal place (for end of life)?
  23. Will every patient admitted to ICU or CCU never survive?
  24. Will surviving family members need counselling? For what & why?
  25. Can food cause diabetes? How & why?
  26. Can food cause heart disease? How & why?
  27. Can food kill?
  28. How much do you think a 5-day hospital stay as in this case would cost in Malaysia today?
  29. How much does dialysis cost today?
  30. How often do diabetics need dialysis?
  31. What are the physiological responses to hemodialysis that may cause intradialytic hypotension (IDH)?
  32. What are the complications following dialysis?
  33. Is dialysis essential?
  34. Are there risks with dialysis?
  35. What are medications for diabetics who need dialysis?
  36. How safe is dialysis today? Can dialysis cause death?
  37. What is the ICD-10 code for the scenario given above?


External links:

Acute anterolateral MI
https://meds.queensu.ca/central/assets/modules/ECG/acute_anterolateral_mi.html

ECG
https://www.researchgate.net/publication/Digital_Processing_of_the_Surface_ECG/
http://emdaily.cooperhealth.org/content/back-basics-ecg-findings-acute-myocardial-infarction-identifying-culprit-vessel
https://commons.wikimedia.org/wiki/File:2022_Electrocardiogram.jpg
https://meds.queensu.ca/central/assets/modules/ECG/waves_and_complexes.html
http://clinicaljunior.com/cardiologyecg.html
https://www.slideshare.net/hsslearningcenter/12-lead-handout
https://www.slideshare.net/yap_berna/basic-ecg-12051841
https://thenursesnotes.com/NCLEX/?p=1160
https://thoracickey.com/introduction-to-the-ecg/
https://twitter.com/kpsdfmr/status/533079400062156800
http://ecgreview.weebly.com/components-of-the-ecg-strip.html
http://pubs.sciepub.com/bse/2/1/3/figure/2
https://archive.cnx.org/review-of-data-analysis-methods-for-denoising-and-characterizing-ecg

STEMI
https://myheart.net/articles/stemi/
http://www.laerdal.com/doc/198/Learn-Rapid-STEMI-ID

Cardiac cycle
https://www.researchgate.net/Arterial_tension_throughout_the_cardiac_cycle_Bioelectromagnetic_Assessment/
http://ocw.tufts.edu/Content/50/lecturenotes/634463/634553

Cardiogenic shock
https://emedicine.medscape.com/article/152191-overview
https://www.intechopen.com/books/interventional-cardiology/cardiogenic-shock
http://www.medicalzone.net/symptom-finder---the-causes-of-shock.html

Drugs
http://howmed.net/physiology/electrocardiogram-ecg/
http://howmed.net/contents/pharmacology/cardiovascular-system/

Hemodialysis
https://www.researchgate.net/Effects_of_hemodialysis_on_cardiac_function/

ICD-10
http://www.icd10data.com/
http://www.icd10data.com/ICD10CM/Codes

Friday, 10 November 2017

Computers in the Labs

Note: This is a postgraduate topic. I have included it here simply because I think it is best to introduce this topic early to medical students who have a keen interest in computers. They may think that they may have to forego their interest in computers when they take up medicine. They don't have to. Computers are widely used in Medicine today. This post is an introductory article about the use of computers in the clinical laboratory. There is a good review article in 2014 in the external links below that gives a clear overview of what is to come in the future. There is an article that highlights precautions when interpreting diagnostic tests and when using algorithms.

The computer revolution is among the fastest we have to date, competing with other revolutions in the car industry, electronics industry, weapons industry, space industry, drug discovery industry, food industry and fashion industry. There are countless industries going on and evolving, some which we fail to update ourselves with.

Let's look at computers. Where are we today with computers?

Malaysia is an ancient land mass, but a young developing nation. It is considered old enough, but young enough to still absorb new technologies. Malaysia has evolved and is still evolving. One of the fastest evolving industries in Malaysia today is the use of computers in its clinical laboratories (clinical labs).

The hospital and its associated labs

Some hospitals are big and some are small. Big established hospitals have at least 8 associated clinical labs and 8 specialist clinics in addition to the emergency rooms, day wards, hospital wards, recovery rooms and operation theatres. Let's not forget the mortuary.

Clinical labs

We will focus on the clinical biochemistry lab (USA), also called chemical pathology lab (UK). This may be lumped together with other disciplines and called pathology lab. We will focus on clinical biochemistry lab services.

Lab technologists

The people who perform the laboratory tests in clinical labs are referred to as medical laboratory technologists (MLTs), med techs, lab technologists or just technologists. They have undergone 4 years laboratory training in at least 8 clinical lab disciplines at a local university. They are diploma graduates. Their experiences working in the labs are most precious, but hardly tapped and discussed.

Number of tests

Each lab technologist performs many tests a day, on many instruments and chemistry analyzers in the lab. The technologists then enter the lab results (lab data) into the computers in the lab, or the computers capture lab results automatically.

The number of tests have increased as a result of 2 things - more tests are available now (bigger test selection) and more patients have come to hospital (better hospital awareness).

Big hospitals have well established clinical biochemistry labs which perform a minimum of 20,000 tests per month. As the number of tests have increased, so have the pressure to perform these tests on time and return the test results to the doctor on time.

Turnaround time (TAT)

Is there such a thing as 'right on time' or 'just in time'? That is a subjective notion. In the computerised clinical labs, every step of the workflow and work process is TIMED. Yes, everything is timed.

How is everything timed in the clinical lab? The patient is marked the minute he/she registers at the hospital counter. A set of barcodes is printed that tells his hospital details. It is his hospital ID and digital hospital bookmark. The barcode travels everywhere the patient goes in the hospital.

When his blood specimens are taken and sent to the lab for analysis, the blood sampling time and test requisition times are entered into the computer.

When the specimens reach the clinical lab, another time is stamped (arrival time). The the specimens are processed to obtain the samples needed for analyses. Sometimes the original tubes (primary tubes) are used on the analyzers, without a need for processing and tube transfer.

When the test results are ready, a time is recorded. The test results are conveyed to the computer system in the lab, and travels to the doctor who requested the test. However, the doctor may be away after hours or gone for 3 months's holiday. In this case, the computer system stores the test results till he returns to have a look at them. Or another doctor who is replacing him can take a look at the patient and the patient's data. This is fine.

The average turnaround time (TAT) for a clinical lab data is 1 hour. This means the doctor and the patient has to wait a minimum of 1 hour before the test results are ready. Why is it 1 hour and not less? How can it be less? It can't be less because it takes time to bring the specimen from the ward or clinic to the clinical lab. It takes time for the technologists to centrifuge and separate serum or plasma from blood, unless blood can be used for tests. It is takes time to perform a test. Once the results are ready, they have to be verified by a doctor in the clinical lab, before the same results are flash on the computer screen in the doctor's office.

Clinical chemical pathologists

Who are these people? The clinical chemical pathologists are doctors who have specialised in Chemical Pathology for their postgraduate master's degree. This postgraduate degree is called Master of Medicine in Chemical Pathology (MPath Chemical Pathology), or MPath Chem Path. It is highly sought as it enables the qualified doctor to work in the clinical chemical pathology lab.

Previously, scientists with PhD were running the lab as they have sufficient lab training and 10 years labwork or labbench experience. However, the Health Ministry (Kementerian Kesihatan Malaysia, KKM) had passed a memo that only doctors can run the clinical chemistry lab. So the MPath Chem Path doctors rule the lab. They verify the test results before the result are released to the doctors in the clinics and wards.

I think this is a waste of resources and untapped expertise as PhD are better trained at labwork and the Chemical Pathologists are better at interpreting the test results. They should be working side by side. Unfortunately, this is not the case. So this is a sad thing in reality.

Computers in the labs

Why are there computers in the lab? They are useless unless put to work effectively. The computers have to run on a suitable computer program (software). The computer program be designed and made in-house or bought off the shelf from a computer vendor. It all boils down to how much money the hospital is willing to invest in a computer system.

Cost

A complete computer system is expensive. Costs run from a minimum of RM1 million. Before the purchase is made, an intensive plan of action and numerous meetings and resolutions have been made. Once the decision made is to purchase, then everything must work according to plan (roll-out) until it is time to give the password and magic to the hospital administrator (actually the chief IT person).

Incurring expenses

Nothing runs well and the same for years. Things will breakdown. The computer cables may get chewed up by rodents in the roof and underground. Floods may soak and damage the computer cables. Fire may damage the cables. Too many cables criss-crossing all over the hospital can get mixed up and confused. Maintenance checks need to be in place. A backup system needs to be in place. The mess knows no end. Managing and maintaining a computer system for the hospital can be fun or otherwise. There are challenges.

Mark of excellence

The computer system is an expert system. It is a wonderful machine as it can do wonders. An in-house system that is flexible and expandable is better than a bought system that is restrictive but yet expandable with added cost. A hospital with a good IT team that can design, make, implement, run, manage, expand, rebuild, refine, rerun, ... its computer system is the best for any hospital to have. This IT team of the hospital can become the IT company and serve the wider community. It is bad if a vendor has to come in to offer a complete computer system for a public hospital. That is how I see things.



External links:

1. Test ordering (test requisition) / investigation protocols

(i) Inappropriate tests ordering by doctors vs what the lab thinks is appropriate

Antonin Jabor and Vladimir Palicka
Rational use of clinical chemistry investigations: form diagnoses to processes.
Ann Clin Biochem 1998 35: 351-353
Personal View
http://journals.sagepub.com/doi/pdf/10.1177/000456329803500302

(ii) Static vs dynamic rules for investigative protocol for patients undergoing liver transplant

PG Nightingale, M Peters, D Mutimer, JM Neuberger
Effects of a computerised protocol management system on ordering of clinical tests.
Quality in Health Care 1999;3:23-28
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1055178/pdf/qualhc00010-0027.pdf


2. Precautions in diagnostic data interpretation and when using algorithms

Mauro Panteghini
The Future of Laboratory Medicine: Understanding the New Pressures.
Clin Biochem Rev 2004 Nov 25(4): 207-215
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1934959/


3. Pathology & informatics 

Richard G Jones, Owen A Johnson, Gifford Batstone
Informatics and the Clinical Laboratory.
Clin Biochem Rev 35 (3) 2014: 177-193
Review Article
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4204239/pdf/cbr-35-177.pdf

Hagenbichler E, Klinger D, Neuner L, Pfeiffer K-P
Automated computer-assisted evaluation of diagnosis-and-procedure-reports in Austrian hospitals.
Jorgerstr, 3/35, A-1170 Wien: AKH Linz, A-4020 Linz:
Inst. f. Biostatistik, Univ.-Klinik Innsbruck, A-6020 Innsbruck, Austria.
In: Medical Informatics Europe '99, edited by Peter Kokol, Biaz Zupan, Janez Stare

G. Stephens et al. Computerised resources.
In: Medical Informatics Europe '99, edited by Peter Kokol, Biaz Zupan, Janez Stare
  • OpenLabs (by St Jame's Hospital, Dublin)
  • Scoringprogramm Version 1.2 for 1997
  • Scoringprogramm Version 3.1 for 1999 http://www.bmags.gv.at
  • Intensivscoringprogramm Version 2.1 for 1999 for ICU

Marjan Premik, Vladimir Mayer, Marina Kuzman, Miroslav Mayer
Bed Utilization Performances of Slovenian and Croatian Acute Hospital Systems.
University of Ljubljana, Faculty of Medicine, Institute of Social Medicine & Croatian National Institute of Public Health. In: Yates J. ed. Hospital Beds: A Problem for Diagnosis and Management? Heinemann Medical Books Ltd, London 1982, IV.
  • Calculating 4 hospital bed performance indicators:
  • length of stay: 365 * bed occupancy/discharges + deaths
  • throughput: discharges + deaths/available beds
  • turnover interval: (available beds - occupied beds) * 365/discharges + deaths
  • % bed emptiness: (available beds - occupied beds)/available beds * 100
  • The Barber-Johnson's method of pictorial representation of hospital bed use.

M.N. Sarkies, K.-A. Bowles, E.H. Skinner, D. Mitchell, R. Haas, M. Ho, K. Salter, K. May, D. Markham, L. O’Brien, S. Plumb, and T.P. Haines.
Data Collection Methods in Health Services Research.
Hospital Length of Stay and Discharge Destination.
Appl Clin Inform. 2015; 6(1): 96–109.
(Research article)


4. Microbiology & 'turnkey' systems

Paul Wolotsky
Clinical Laboratory Computer Systems
Proc Annu Symp Comput Appl Med Care 1979 Oct 17 : 550-551
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2231988/pdf/procascamc00013-0562.pdf

Paul Wolotsky
Computerisation of Clinical Laboratories.
Proc Annu Symp Comput Appl Med Care 1979 Oct 17 : 552-557
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2231915/pdf/procascamc00013-0564.pdf

C Block
Benefits and limitations of computerised laboratory data.
J Clin Pathol. 1997 Jun 50(6): 448-449
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC499959/pdf/jclinpath00255-0002.pdf


5. Consumer Protection

Austrian Federal Ministry of Labor, Social Affairs and Consumer Protection.
https://www.sozialministerium.at/site/


Monday, 6 November 2017

Retention of Basic Science Knowledge in Clinical Years


The undergraduate medical course is between 5 to 6 years. Basic Science knowledge is taught in first year. They comprise 3 cores subjects - Anatomy, Biochemistry and Physiology. Students have to be able to grasp and retain their knowledge in first year and be able to apply basic science knowledge in their clinical years. Are they able to do this effectively? How is their retention of Basic Science mastered and used in clinical years? What can we do to help students to effectively retains sufficient Basic Science knowledge for them to get through final year?


External links:

http://www.myjurnal.my/public/article-view.php?id=71941

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3931207/

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286721/

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3286721/pdf/squmj-12-77.pdf